PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c26_8280V3.1.p
Common NamePHYPADRAFT_91907
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NF-YB
Protein Properties Length: 162aa    MW: 17655.4 Da    PI: 4.4983
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c26_8280V3.1.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB47.83.5e-1512111695
              NF-YB   6 rflPianvsrimkkvlPana..........kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                        + lP anv r++k  l + a           + kda     e +  fi f+++ a++ c++ kr+t+n+dd+l a+ +l f ++ epl   l
  Pp3c26_8280V3.1.p  12 EDLPQANVKRVVKTKLQELAlghygeerdvSVNKDALLAFSESAKIFIHFLSATANEICRESKRQTVNADDVLKAVEELDFPEFSEPLMRCL 103
                        569**********988753322222222226889999999**************************************************** PP

              NF-YB  88 kkyreleg 95 
                        + +r+ ++
  Pp3c26_8280V3.1.p 104 AAFRKDQE 111
                        ***98655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.1E-2513127IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.4E-3313146IPR009072Histone-fold
PfamPF008083.9E-111487IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGGGGAAQGE GEDLPQANVK RVVKTKLQEL ALGHYGEERD VSVNKDALLA FSESAKIFIH  60
FLSATANEIC RESKRQTVNA DDVLKAVEEL DFPEFSEPLM RCLAAFRKDQ EAKKQDKRKS  120
SGASTPRKRK SDGNFVDDNP AANEDYEDGV AMADDDDTTD N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001777186.11e-116predicted protein
TrEMBLA9TF101e-116A9TF10_PHYPA; Predicted protein
STRINGPP1S217_34V6.11e-115(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP78621516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-31nuclear factor Y, subunit B11
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]